Search for a taxon information

Source: R/rt_taxa_search.R

Search for a taxon information

rt_taxa_search(
  id = NULL,
  sciname = NULL,
  fr_name = NULL,
  en_name = NULL,
  rank = NULL,
  territories = NULL,
  domain = NULL,
  habitats = NULL,
  vernacular = NULL,
  version = NULL,
  page = 1,
  size = 5000
)

Arguments

id

NULL or integer(1+) [default = NULL]
One or more integer giving the id(s) of taxa in TAXREF (also called cdNom)

sciname

NULL or character(1+) [default = NULL]
One or more scientific name of searched taxa

fr_name

NULL or character(1+) [default = NULL]
One or more common name(s) in French of searched taxa

en_name

NULL or character(1+) [default = NULL]
One or more common name(s) in English of searched taxa

rank

NULL or character(1+) [default = NULL]
One of more rank of the searched taxa (see rt_taxo_ranks() for the list of all ranks available):

  • Dumm= Domain

  • KD= Kingdom

  • PH= Phylum

  • CL= Class

  • OR= Order

  • FM= Family

  • SBFM= Subfamily

  • TR= Tribe

  • GN= Genus

  • AGES= Aggregate

  • ES= Species

  • SSES= Subspecies

  • NAT= Natio

  • VAR= Variety

  • SVAR= Sub-variety

  • FO= Form

  • SSFO= Sub-form

  • RACE= Race

  • CAR= Cultivar

  • AB= Abberatio

territories

NULL or character(1+) [default = NULL]
One or more territories where species is present:

  • "fr" = Mainland France

  • "gf" = French Guiana

  • "gua" = Guadeloupe

  • "mar" = Martinique

  • "sm" = Saint Martin

  • "sb" = Saint Barthélemy

  • "spm" = Saint Pierre and Miquelon

  • "epa" = Scattered Islands in the Indian Ocean

  • "may" = Mayotte

  • "reu" = Réunion

  • "sa" = French Southern and Antarctic Lands

  • "ta" = Adélie Land

  • "nc" = New Caledonia

  • "wf" = Wallis and Futuna

  • "pf" = French Polynesia

  • "cli" = Clipperton Island

domain

NULL or character(1) [default = NULL]
The domain where the species is found:

  • "marin" = Marine

  • "continental" = Continental

habitats

NULL or integer(1+) [default = NULL]
One or more habitats where the species is found (see rt_habitats() for a list of all habitats):

  • 1 = Marine

  • 2 = Freshwater

  • 3 = Terrestrial

  • 4 = Marine and freshwater

  • 5 = Marine and Terrestrial

  • 6 = Brackish water

  • 7 = Continental (terrestrial and/or freshwater)

  • 8 = Continental (terrestrial and freshwater)

vernacular

NULL or character(1+) [default = NULL]
Name of a vernacular group (see the list using rt_vernacular_groups())

version

NULL or character(1) [default = NULL]
A string indicating which version of TAXREF should be queried. Should be of the form "2.0" up to "15.0". You can check the available TAXREF versions with rt_taxref_versions(). If NULL uses the latest version of TAXREF available.

page

integer(1) [default = 1]
The page number returned

size

integer(1) [default = 5000]
The number of lines returned per page (maximum = 5000)

See also

the list of available taxonomic ranks rt_taxo_ranks(), the list of available habitats rt_habitats(), the list of vernacular groups rt_taxref_versions(), and the list of TAXREF versions rt_taxref_versions().

Examples

if (FALSE) rt_taxa_search(sciname = "Bradypus") # \dontrun{}