Extract Species by Patch Growth Rates and Optimal Patches

Extract Species by Patch Growth Rates and Optimal Patches

r_env_CT(simul, n_patches, sp1, time)

Arguments

simul

a simulation output from multigen()

n_patches

the number of patches in the simulation

sp1

the number of species

time

the time slice at which e

Value

Outputs 4 data.frame of species by patch mismatches each with four columns:

  • env_all -> Environmental Growth only

  • r_all -> Environmental + Hierarchical competition Growth only

  • r_comp -> Abundance

  • r_envab -> Abundance based on environmental filtering only

The 4 data.frame are:

  • env -> Patch

  • sp -> Species

  • r_env -> Observed statistic (environmental growth, total growth, abundance, environmental filtering abundance)

  • max_r_env -> Patch of maximum observed statistic